PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g08130
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family AP2
Protein Properties Length: 496aa    MW: 55967.5 Da    PI: 7.1898
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g08130genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.3e-17153202155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I+d+     rk+++lg f+ta  Aa+a+++a+ k++g
  CA04g08130 153 SQYRGVTFYRRTGRWESHIWDC-----RKQVYLGGFDTAHAAARAYDRAAIKFRG 202
                 78*******************5.....5************************997 PP

2AP242.91.2e-13245295155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  CA04g08130 245 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDTEVEAARAYDKAAIKCNG 295
                 89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-9153202IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-15153211IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.7E-17154210IPR001471AP2/ERF domain
SMARTSM003808.0E-31154216IPR001471AP2/ERF domain
PROSITE profilePS5103217.53154210IPR001471AP2/ERF domain
PfamPF008475.4E-9245295IPR001471AP2/ERF domain
CDDcd000184.46E-25245303No hitNo description
SuperFamilySSF541712.03E-17245305IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-16246304IPR001471AP2/ERF domain
SMARTSM003802.6E-31246309IPR001471AP2/ERF domain
PROSITE profilePS5103215.606246303IPR001471AP2/ERF domain
PRINTSPR003675.7E-6247258IPR001471AP2/ERF domain
PRINTSPR003675.7E-6285305IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MWNLNDSPDQ IMEDESEEGY HSPIDEKGKR VGSVSNSSSS MVLVVDNGNS EEEEGERGKK  60
KRSTPSKIFG FSVSKDNLSS DSELPVVTRQ FFPVENESEM GDESTIFPRA QWAEIKFYTS  120
ESPLGTGSVA NPTEVSQQQP IKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCRKQVYL  180
GGFDTAHAAA RAYDRAAIKF RGVAADINFN LEDYEEDLKQ MSNLTKEEFV HVLRRQSTGF  240
PRGSSKYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFDTEV EAARAYDKAA IKCNGKDAVT  300
NFDRSIYENE PNSSECTDNA ADHNLDLSLG GSSSKKGSRE MGENRDQNSS LQLDARWGHQ  360
GSRPNKLPSQ MGFDGQRREG YNETETLQLS DLTHLNSLGT LQPNINEVQR FGQYGEAHMV  420
QVYPRQFSSY QTPSSSNEGQ IRATSNSQEW HPNFRLPRHQ IFATAAASSG FSQQITRPQN  480
WSQNTGFHHT FMRPS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6773820.0EU677382.1 Solanum lycopersicum APETALA2-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016570195.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
SwissprotP479271e-124AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLM1A7W50.0M1A7W5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000165850.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20192365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-112AP2 family protein